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SAIR Releases 5.24 Million-Entry Dataset

·2025.09.03 01:54

Key point

SandboxAQ has released SAIR, a dataset of 5.24 million 3D protein-ligand structures for predicting drug efficacy.

Details

SandboxAQ has launched SAIR (Structurally Augmented IC50 Repository). This dataset contains 5.24 million AI-generated 3D protein-ligand structures combined with experimentally measured IC₅₀ (half maximal inhibitory concentration) labels, enabling a direct link between molecular structure and drug efficacy.

Existing AI-based drug design has faced limitations in predicting efficacy or toxicity from molecular structure alone, but SAIR bridges this gap by providing high-quality 3D structures paired with validated binding efficacy data at scale. This allows the hit-to-lead discovery and optimization process to shift from the wet lab to in silico simulation, accelerating R&D speed.

The dataset was built using the Boltz1 model and 760 NVIDIA H100 processors, requiring a total of 130,000 GPU hours. Through optimization using NVIDIA DGX Cloud, data generation was completed 4 times faster than originally expected.

SAIR is released under a CC BY 4.0 license, making it freely available for both commercial and non-commercial research purposes.

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